16 results
Leveraging Bluetooth low-energy technology to improve contact tracing among healthcare personnel in hospital setting during the coronavirus disease 2019 (COVID-19) pandemic
- M. Cristina Vazquez Guillamet, Ashraf Rjob, Jingwen Zhang, Ruixuan Dai, Ruiqi Wang, Christopher Damulira, Reshad Hamauon, Jeff Candell, Jennie H. Kwon, Hilary Babcock, Thomas C. Bailey, Chenyang Lu, Victoria Fraser
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- Journal:
- Infection Control & Hospital Epidemiology / Volume 45 / Issue 4 / April 2024
- Published online by Cambridge University Press:
- 20 November 2023, pp. 546-548
- Print publication:
- April 2024
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To improve contact tracing for healthcare workers, we built and configured a Bluetooth low-energy system. We predicted close contacts with great accuracy and provided an additional contact yield of 14.8%. This system would decrease the effective reproduction number by 56% and would unnecessarily quarantine 0.74% of employees weekly.
Comparison of anthropometric indicators to predict mortality in a population-based prospective study of children under 5 years in Niger
- Kieran S O’Brien, Abdou Amza, Boubacar Kadri, Beido Nassirou, Sun Y Cotter, Nicole E Stoller, Sheila K West, Robin L Bailey, Travis C Porco, Jeremy D Keenan, Thomas M Lietman, Catherine E Oldenburg
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- Journal:
- Public Health Nutrition / Volume 23 / Issue 3 / February 2020
- Published online by Cambridge University Press:
- 09 September 2019, pp. 538-543
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Objective:
In the present study, we aimed to compare anthropometric indicators as predictors of mortality in a community-based setting.
Design:We conducted a population-based longitudinal study nested in a cluster-randomized trial. We assessed weight, height and mid-upper arm circumference (MUAC) on children 12 months after the trial began and used the trial’s annual census and monitoring visits to assess mortality over 2 years.
Setting:Niger.
Participants:Children aged 6–60 months during the study.
Results:Of 1023 children included in the study at baseline, height-for-age Z-score, weight-for-age Z-score, weight-for-height Z-score and MUAC classified 777 (76·0 %), 630 (61·6 %), 131 (12·9 %) and eighty (7·8 %) children as moderately to severely malnourished, respectively. Over the 2-year study period, fifty-eight children (5·7 %) died. MUAC had the greatest AUC (0·68, 95 % CI 0·61, 0·75) and had the strongest association with mortality in this sample (hazard ratio = 2·21, 95 % CI 1·26, 3·89, P = 0·006).
Conclusions:MUAC appears to be a better predictor of mortality than other anthropometric indicators in this community-based, high-malnutrition setting in Niger.
C.01 Neck and arm pain after surgery for cervical myelopathy: outcomes and predictors of improvement
- A Dakson, S Christie, B Jacobs, M Johnson, C Bailey, R Charest-Morin, J Paquet, A Nataraj, D Cadotte, J Wilson, N Manson, H Hall, K Thomas, R Rampersaud, G McIntosh, C Fisher, N Dea
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- Journal:
- Canadian Journal of Neurological Sciences / Volume 46 / Issue s1 / June 2019
- Published online by Cambridge University Press:
- 05 June 2019, p. S12
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Background: Cervical sponylotic myelopathy (CSM) may present with neck and arm pain. This study investiagtes the change in neck/arm pain post-operatively in CSM. Methods: This ambispective study llocated 402 patients through the Canadian Spine Outcomes and Research Network. Outcome measures were the visual analogue scales for neck and arm pain (VAS-NP and VAS-AP) and the neck disability index (NDI). The thresholds for minimum clinically important differences (MCIDs) for VAS-NP and VAS-AP were determined to be 2.6 and 4.1. Results: VAS-NP improved from mean of 5.6±2.9 to 3.8±2.7 at 12 months (P<0.001). VAS-AP improved from 5.8±2.9 to 3.5±3.0 at 12 months (P<0.001). The MCIDs for VAS-NP and VAS-AP were also reached at 12 months. Based on the NDI, patients were grouped into those with mild pain/no pain (33%) versus moderate/severe pain (67%). At 3 months, a significantly high proportion of patients with moderate/severe pain (45.8%) demonstrated an improvement into mild/no pain, whereas 27.2% with mild/no pain demonstrated worsening into moderate/severe pain (P <0.001). At 12 months, 17.4% with mild/no pain experienced worsening of their NDI (P<0.001). Conclusions: This study suggests that neck and arm pain responds to surgical decompression in patients with CSM and reaches the MCIDs for VAS-AP and VAS-NP at 12 months.
Consultation and Surgical Wait Times in Cervical Spondylotic Myelopathy
- Babak Sharifi, Greg McIntosh, Charles Fisher, W. Bradley Jacobs, Michael Johnson, Christopher S. Bailey, Sean Christie, Raphaële Charest-Morin, Jérome Paquet, Andrew Nataraj, David Cadotte, Neil Manson, Hamilton Hall, Kenneth C. Thomas, Y. Raja Rampersaud, Nicolas Dea
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- Journal:
- Canadian Journal of Neurological Sciences / Volume 46 / Issue 4 / July 2019
- Published online by Cambridge University Press:
- 03 May 2019, pp. 430-435
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Background: Cervical spondylotic myelopathy (CSM) is the leading cause of spinal cord impairment. In a public healthcare system, wait times to see spine specialists and eventually access surgical treatment for CSM can be substantial. The goals of this study were to determine consultation wait times (CWT) and surgical wait times (SWT), and identify predictors of wait time length. Methods: Consecutive patients enrolled in the Canadian Spine Outcomes and Research Network (CSORN) prospective and observational CSM study from March 2015 to July 2017 were included. A data-splitting technique was used to develop and internally validate multivariable models of potential predictors. Results: A CSORN query returned 264 CSM patients for CWT. The median was 46 days. There were 31% mild, 35% moderate, and 33% severe CSM. There was a statistically significant difference in median CWT between moderate and severe groups; 207 patients underwent surgical treatment. Median SWT was 42 days. There was a statistically significant difference in SWT between mild/moderate and severe groups. Short symptom duration, less pain, lower BMI, and lower physical component score of SF-12 were predictive of shorter CWT. Only baseline pain and medication duration were predictive of SWT. Both CWT and SWT were shorter compared to a concurrent cohort of lumbar stenosis patients (p <0.001). Conclusions: Patients with shorter duration (either symptoms or medication) and less neck pain waited less to see a spine specialist in Canada and to undergo surgical treatment. This study highlights some of the obstacles to overcome in expedited care for this patient population.
Late Quaternary chronology of major dune ridge development in the northeast Rub' al-Khali, United Arab Emirates
- Oliver A. C. Atkinson, David S. G. Thomas, Andrew S. Goudie, Richard M. Bailey
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- Journal:
- Quaternary Research / Volume 76 / Issue 1 / July 2011
- Published online by Cambridge University Press:
- 20 January 2017, pp. 93-105
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The northeastern sector of the Rub' al-Khali desert in the eastern United Arab Emirates (UAE) is dominated by large NE–SW trending dune ridges orientated perpendicular to the currently prevailing northwesterly wind regime. In this study, extensive use has been made of artificially exposed sections through these major dune ridges that reveal internal sedimentary structures and allow an intensive, high-resolution sampling programme to be carried out. Here, we present the optical dating results for samples from 7 sections. The results indicate that dune activity and preservation occurred within the periods 7–3 ka, 16–10 ka and 22–20 ka with evidence of earlier preservation during marine oxygen isotope stages MIS 3 and 5, with net accumulation rates in the range 2.2–25 m.ka− 1. In several instances, hiatuses in the preserved record of dune accumulation coincide with stratigraphic bounding surfaces visible in the exposed section profiles with associated truncation of internal sedimentary structures. Caution must be exercised when interpreting such gaps in the recorded accumulation chronologies of these dunes since these may simply constitute phases of low preservation potential rather than phases of low aeolian activity. Other factors such as sediment supply and availability in relation to sea-level dynamics may be significant and are also considered.
Impact of Fall and Early Spring Herbicide Applications on Insect Injury and Soil Conditions in No-Till Corn
- Nicholas Monnig, Thomas L. Clark, Wayne C. Bailey, Kevin W. Bradley
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- Journal:
- Weed Technology / Volume 21 / Issue 4 / December 2007
- Published online by Cambridge University Press:
- 20 January 2017, pp. 1002-1009
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Field studies were established at two Missouri locations in 2004 and 2005 to evaluate the effects of fall and early spring herbicide applications on soil temperature, soil moisture content, and insect injury in no-till corn production systems. Both experiments received applications of simazine plus 2,4-D, rimsulfuron plus thifensulfuron plus 2,4-D, and glyphosate plus 2,4-D in the fall, 45 d prior to planting (45 d EPP), 30 d prior to planting (30 d EPP), and 7 d prior to planting (7 d EPP). During a period from April 1 to April 14, simazine plus 2,4-D applied 45 d EPP resulted in higher soil temperatures at a 5-cm depth compared to the untreated control. However, there were few differences in soil temperature present from April 15 to May 1. Soil moisture readings taken during this same time period correlated with soil temperature readings. Measurements of soil moisture taken at 1 and 3 wk after planting (WAP) revealed significantly lower soil moisture readings in the untreated compared to herbicide treated plots. This lower soil moisture content allowed untreated plots to warm up more rapidly and thereby eliminated any negative impacts that dense stands of winter annual weeds may have had on soil temperature. Evaluations of corn flea beetle and lepidopteron injury taken at the V2, V4, and V6 corn leaf stages revealed significant differences in injury as a result of these treatments. When dense stands of winter and summer annual weeds were left uncontrolled, corn flea beetle injury was significantly lower than in plots treated with a herbicide. However, when a post herbicide application was made to remove all weed species prior to the V6 sampling date, differences in corn flea beetle injury between the untreated and herbicide treated plots were eliminated. Additionally, removal of all weed species led to higher lepidopteron injury in the untreated.
Contributors
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- By Mitchell Aboulafia, Frederick Adams, Marilyn McCord Adams, Robert M. Adams, Laird Addis, James W. Allard, David Allison, William P. Alston, Karl Ameriks, C. Anthony Anderson, David Leech Anderson, Lanier Anderson, Roger Ariew, David Armstrong, Denis G. Arnold, E. J. Ashworth, Margaret Atherton, Robin Attfield, Bruce Aune, Edward Wilson Averill, Jody Azzouni, Kent Bach, Andrew Bailey, Lynne Rudder Baker, Thomas R. Baldwin, Jon Barwise, George Bealer, William Bechtel, Lawrence C. Becker, Mark A. Bedau, Ernst Behler, José A. Benardete, Ermanno Bencivenga, Jan Berg, Michael Bergmann, Robert L. Bernasconi, Sven Bernecker, Bernard Berofsky, Rod Bertolet, Charles J. Beyer, Christian Beyer, Joseph Bien, Joseph Bien, Peg Birmingham, Ivan Boh, James Bohman, Daniel Bonevac, Laurence BonJour, William J. Bouwsma, Raymond D. Bradley, Myles Brand, Richard B. Brandt, Michael E. Bratman, Stephen E. Braude, Daniel Breazeale, Angela Breitenbach, Jason Bridges, David O. Brink, Gordon G. Brittan, Justin Broackes, Dan W. Brock, Aaron Bronfman, Jeffrey E. Brower, Bartosz Brozek, Anthony Brueckner, Jeffrey Bub, Lara Buchak, Otavio Bueno, Ann E. Bumpus, Robert W. Burch, John Burgess, Arthur W. Burks, Panayot Butchvarov, Robert E. Butts, Marina Bykova, Patrick Byrne, David Carr, Noël Carroll, Edward S. Casey, Victor Caston, Victor Caston, Albert Casullo, Robert L. Causey, Alan K. L. Chan, Ruth Chang, Deen K. Chatterjee, Andrew Chignell, Roderick M. Chisholm, Kelly J. Clark, E. J. Coffman, Robin Collins, Brian P. Copenhaver, John Corcoran, John Cottingham, Roger Crisp, Frederick J. Crosson, Antonio S. Cua, Phillip D. Cummins, Martin Curd, Adam Cureton, Andrew Cutrofello, Stephen Darwall, Paul Sheldon Davies, Wayne A. Davis, Timothy Joseph Day, Claudio de Almeida, Mario De Caro, Mario De Caro, John Deigh, C. F. Delaney, Daniel C. Dennett, Michael R. DePaul, Michael Detlefsen, Daniel Trent Devereux, Philip E. Devine, John M. Dillon, Martin C. Dillon, Robert DiSalle, Mary Domski, Alan Donagan, Paul Draper, Fred Dretske, Mircea Dumitru, Wilhelm Dupré, Gerald Dworkin, John Earman, Ellery Eells, Catherine Z. Elgin, Berent Enç, Ronald P. Endicott, Edward Erwin, John Etchemendy, C. Stephen Evans, Susan L. Feagin, Solomon Feferman, Richard Feldman, Arthur Fine, Maurice A. Finocchiaro, William FitzPatrick, Richard E. Flathman, Gvozden Flego, Richard Foley, Graeme Forbes, Rainer Forst, Malcolm R. Forster, Daniel Fouke, Patrick Francken, Samuel Freeman, Elizabeth Fricker, Miranda Fricker, Michael Friedman, Michael Fuerstein, Richard A. Fumerton, Alan Gabbey, Pieranna Garavaso, Daniel Garber, Jorge L. A. Garcia, Robert K. Garcia, Don Garrett, Philip Gasper, Gerald Gaus, Berys Gaut, Bernard Gert, Roger F. Gibson, Cody Gilmore, Carl Ginet, Alan H. Goldman, Alvin I. Goldman, Alfonso Gömez-Lobo, Lenn E. Goodman, Robert M. Gordon, Stefan Gosepath, Jorge J. E. Gracia, Daniel W. Graham, George A. Graham, Peter J. Graham, Richard E. Grandy, I. Grattan-Guinness, John Greco, Philip T. Grier, Nicholas Griffin, Nicholas Griffin, David A. Griffiths, Paul J. Griffiths, Stephen R. Grimm, Charles L. Griswold, Charles B. Guignon, Pete A. Y. Gunter, Dimitri Gutas, Gary Gutting, Paul Guyer, Kwame Gyekye, Oscar A. Haac, Raul Hakli, Raul Hakli, Michael Hallett, Edward C. Halper, Jean Hampton, R. James Hankinson, K. R. Hanley, Russell Hardin, Robert M. Harnish, William Harper, David Harrah, Kevin Hart, Ali Hasan, William Hasker, John Haugeland, Roger Hausheer, William Heald, Peter Heath, Richard Heck, John F. Heil, Vincent F. Hendricks, Stephen Hetherington, Francis Heylighen, Kathleen Marie Higgins, Risto Hilpinen, Harold T. Hodes, Joshua Hoffman, Alan Holland, Robert L. Holmes, Richard Holton, Brad W. Hooker, Terence E. Horgan, Tamara Horowitz, Paul Horwich, Vittorio Hösle, Paul Hoβfeld, Daniel Howard-Snyder, Frances Howard-Snyder, Anne Hudson, Deal W. Hudson, Carl A. Huffman, David L. Hull, Patricia Huntington, Thomas Hurka, Paul Hurley, Rosalind Hursthouse, Guillermo Hurtado, Ronald E. Hustwit, Sarah Hutton, Jonathan Jenkins Ichikawa, Harry A. Ide, David Ingram, Philip J. Ivanhoe, Alfred L. Ivry, Frank Jackson, Dale Jacquette, Joseph Jedwab, Richard Jeffrey, David Alan Johnson, Edward Johnson, Mark D. Jordan, Richard Joyce, Hwa Yol Jung, Robert Hillary Kane, Tomis Kapitan, Jacquelyn Ann K. Kegley, James A. Keller, Ralph Kennedy, Sergei Khoruzhii, Jaegwon Kim, Yersu Kim, Nathan L. King, Patricia Kitcher, Peter D. Klein, E. D. Klemke, Virginia Klenk, George L. Kline, Christian Klotz, Simo Knuuttila, Joseph J. Kockelmans, Konstantin Kolenda, Sebastian Tomasz Kołodziejczyk, Isaac Kramnick, Richard Kraut, Fred Kroon, Manfred Kuehn, Steven T. Kuhn, Henry E. Kyburg, John Lachs, Jennifer Lackey, Stephen E. Lahey, Andrea Lavazza, Thomas H. Leahey, Joo Heung Lee, Keith Lehrer, Dorothy Leland, Noah M. Lemos, Ernest LePore, Sarah-Jane Leslie, Isaac Levi, Andrew Levine, Alan E. Lewis, Daniel E. Little, Shu-hsien Liu, Shu-hsien Liu, Alan K. L. Chan, Brian Loar, Lawrence B. Lombard, John Longeway, Dominic McIver Lopes, Michael J. Loux, E. J. Lowe, Steven Luper, Eugene C. Luschei, William G. Lycan, David Lyons, David Macarthur, Danielle Macbeth, Scott MacDonald, Jacob L. Mackey, Louis H. Mackey, Penelope Mackie, Edward H. Madden, Penelope Maddy, G. B. Madison, Bernd Magnus, Pekka Mäkelä, Rudolf A. Makkreel, David Manley, William E. Mann (W.E.M.), Vladimir Marchenkov, Peter Markie, Jean-Pierre Marquis, Ausonio Marras, Mike W. Martin, A. P. Martinich, William L. McBride, David McCabe, Storrs McCall, Hugh J. McCann, Robert N. McCauley, John J. McDermott, Sarah McGrath, Ralph McInerny, Daniel J. McKaughan, Thomas McKay, Michael McKinsey, Brian P. McLaughlin, Ernan McMullin, Anthonie Meijers, Jack W. Meiland, William Jason Melanson, Alfred R. Mele, Joseph R. Mendola, Christopher Menzel, Michael J. Meyer, Christian B. Miller, David W. Miller, Peter Millican, Robert N. Minor, Phillip Mitsis, James A. Montmarquet, Michael S. Moore, Tim Moore, Benjamin Morison, Donald R. Morrison, Stephen J. Morse, Paul K. Moser, Alexander P. D. Mourelatos, Ian Mueller, James Bernard Murphy, Mark C. Murphy, Steven Nadler, Jan Narveson, Alan Nelson, Jerome Neu, Samuel Newlands, Kai Nielsen, Ilkka Niiniluoto, Carlos G. Noreña, Calvin G. Normore, David Fate Norton, Nikolaj Nottelmann, Donald Nute, David S. Oderberg, Steve Odin, Michael O’Rourke, Willard G. Oxtoby, Heinz Paetzold, George S. Pappas, Anthony J. Parel, Lydia Patton, R. P. Peerenboom, Francis Jeffry Pelletier, Adriaan T. Peperzak, Derk Pereboom, Jaroslav Peregrin, Glen Pettigrove, Philip Pettit, Edmund L. Pincoffs, Andrew Pinsent, Robert B. Pippin, Alvin Plantinga, Louis P. Pojman, Richard H. Popkin, John F. Post, Carl J. Posy, William J. Prior, Richard Purtill, Michael Quante, Philip L. Quinn, Philip L. Quinn, Elizabeth S. Radcliffe, Diana Raffman, Gerard Raulet, Stephen L. Read, Andrews Reath, Andrew Reisner, Nicholas Rescher, Henry S. Richardson, Robert C. Richardson, Thomas Ricketts, Wayne D. Riggs, Mark Roberts, Robert C. Roberts, Luke Robinson, Alexander Rosenberg, Gary Rosenkranz, Bernice Glatzer Rosenthal, Adina L. Roskies, William L. Rowe, T. M. Rudavsky, Michael Ruse, Bruce Russell, Lilly-Marlene Russow, Dan Ryder, R. M. Sainsbury, Joseph Salerno, Nathan Salmon, Wesley C. Salmon, Constantine Sandis, David H. Sanford, Marco Santambrogio, David Sapire, Ruth A. Saunders, Geoffrey Sayre-McCord, Charles Sayward, James P. Scanlan, Richard Schacht, Tamar Schapiro, Frederick F. Schmitt, Jerome B. Schneewind, Calvin O. Schrag, Alan D. Schrift, George F. Schumm, Jean-Loup Seban, David N. Sedley, Kenneth Seeskin, Krister Segerberg, Charlene Haddock Seigfried, Dennis M. Senchuk, James F. Sennett, William Lad Sessions, Stewart Shapiro, Tommie Shelby, Donald W. Sherburne, Christopher Shields, Roger A. Shiner, Sydney Shoemaker, Robert K. Shope, Kwong-loi Shun, Wilfried Sieg, A. John Simmons, Robert L. Simon, Marcus G. Singer, Georgette Sinkler, Walter Sinnott-Armstrong, Matti T. Sintonen, Lawrence Sklar, Brian Skyrms, Robert C. Sleigh, Michael Anthony Slote, Hans Sluga, Barry Smith, Michael Smith, Robin Smith, Robert Sokolowski, Robert C. Solomon, Marta Soniewicka, Philip Soper, Ernest Sosa, Nicholas Southwood, Paul Vincent Spade, T. L. S. Sprigge, Eric O. Springsted, George J. Stack, Rebecca Stangl, Jason Stanley, Florian Steinberger, Sören Stenlund, Christopher Stephens, James P. Sterba, Josef Stern, Matthias Steup, M. A. Stewart, Leopold Stubenberg, Edith Dudley Sulla, Frederick Suppe, Jere Paul Surber, David George Sussman, Sigrún Svavarsdóttir, Zeno G. Swijtink, Richard Swinburne, Charles C. Taliaferro, Robert B. Talisse, John Tasioulas, Paul Teller, Larry S. Temkin, Mark Textor, H. S. Thayer, Peter Thielke, Alan Thomas, Amie L. Thomasson, Katherine Thomson-Jones, Joshua C. Thurow, Vzalerie Tiberius, Terrence N. Tice, Paul Tidman, Mark C. Timmons, William Tolhurst, James E. Tomberlin, Rosemarie Tong, Lawrence Torcello, Kelly Trogdon, J. D. Trout, Robert E. Tully, Raimo Tuomela, John Turri, Martin M. Tweedale, Thomas Uebel, Jennifer Uleman, James Van Cleve, Harry van der Linden, Peter van Inwagen, Bryan W. Van Norden, René van Woudenberg, Donald Phillip Verene, Samantha Vice, Thomas Vinci, Donald Wayne Viney, Barbara Von Eckardt, Peter B. M. Vranas, Steven J. Wagner, William J. Wainwright, Paul E. Walker, Robert E. Wall, Craig Walton, Douglas Walton, Eric Watkins, Richard A. Watson, Michael V. Wedin, Rudolph H. Weingartner, Paul Weirich, Paul J. Weithman, Carl Wellman, Howard Wettstein, Samuel C. Wheeler, Stephen A. White, Jennifer Whiting, Edward R. Wierenga, Michael Williams, Fred Wilson, W. Kent Wilson, Kenneth P. Winkler, John F. Wippel, Jan Woleński, Allan B. Wolter, Nicholas P. Wolterstorff, Rega Wood, W. Jay Wood, Paul Woodruff, Alison Wylie, Gideon Yaffe, Takashi Yagisawa, Yutaka Yamamoto, Keith E. Yandell, Xiaomei Yang, Dean Zimmerman, Günter Zoller, Catherine Zuckert, Michael Zuckert, Jack A. Zupko (J.A.Z.)
- Edited by Robert Audi, University of Notre Dame, Indiana
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- Book:
- The Cambridge Dictionary of Philosophy
- Published online:
- 05 August 2015
- Print publication:
- 27 April 2015, pp ix-xxx
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Computer Simulation of Dialect Feature Diffusion
- William A. Kretzschmar, Jr., Ilkka Juuso, C. Thomas Bailey
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- Journal of Linguistic Geography / Volume 2 / Issue 1 / March 2014
- Published online by Cambridge University Press:
- 04 July 2014, pp. 41-57
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This paper describes the independent construction and implementation of two cellular automata that model dialect feature diffusion as the adaptive aspect of the complex system of speech. We show how a feature, once established, can spread across an area, and how the distribution of a dialect feature as it stands in Linguistic Atlas data could either spread or diminish. Cellular automata use update rules to determine the status of a feature at a given location with respect to the status of its neighboring locations. In each iteration all locations in a matrix are evaluated, and then the new status for each one is displayed all at once. Throughout hundreds of iterations, we can watch regional distributional patterns emerge as a consequence of these simple update rules. We validate patterns with respect to the linguistic distributions known to occur in the Linguistic Atlas Project.
Chapter Nineteen - Functional and heritable consequences of plant genotype on community composition and ecosystem processes
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- By Jennifer A. Schweitzer, Department of Ecology and Evolutionary Biology, University of Tennessee, Joseph K. Bailey, Department of Ecology and Evolutionary Biology, University of Tennessee, Dylan G. Fischer, Environmental Studies Program, The Evergreen State College, Carri J. LeRoy, Environmental Studies Program, The Evergreen State College, Thomas G. Whitham, Department of Biological Sciences, Northern Arizona University, Stephen C. Hart, School of Natural Sciences and Sierra Nevada Research Institute, University of California – Merced
- Edited by Takayuki Ohgushi, Kyoto University, Japan, Oswald Schmitz, Yale University, Connecticut, Robert D. Holt, University of Florida
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- Trait-Mediated Indirect Interactions
- Published online:
- 05 February 2013
- Print publication:
- 06 December 2012, pp 371-390
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Summary
Introduction
Foundation species represent excellent model systems for understanding the broad consequences of variation on community and ecosystem processes as they provide a focal resource upon which associated interacting species depend. As foundation species (Dayton 1972; Ellison et al. 2005), trees and other dominant plants often create stable conditions via plant traits that allow dependent communities to assemble regularly and influence ecosystem processes such as net primary productivity (NPP) and soil fertility (i.e., nutrient cycling, via accumulations of leaf or root organic matter or root exudates; Zinke 1962; Zak et al. 1986; Binkley and Giardina 1998; Bartelt-Ryser et al. 2005; Wardle 2006). Recent studies in both terrestrial and aquatic habitats have shown that intraspecific genetic variation (defined at multiple genetic scales, including introgression [movement of genes from one species to another], genotypic diversity [studies manipulating the number of genotypes in a population] and genotypic variation [variation among genotypes]) in foundation plants can have community-wide consequences. Intraspecific variation affects associated vertebrate, arthropod and microbial community composition or activity and ecosystem level processes (recently reviewed in Johnson and Stinchcombe 2007; Hughes et al. 2008; Whitham et al. 2008; Bailey et al. 2009). For example, genetic variation resulting from the introgression of genes from one species to another through the process of hybridization has been shown to have important consequences for associated species, communities and ecosystem processes in multiple hybridizing plant species, including Salix spp., Eucalyptus spp., Quercus spp. and Populus spp. (Fritz et al. 1994; Dungey et al. 2000; Hochwender and Fritz 2004; Ito and Ozaki 2005; Wimp et al. 2005; Tovar-Sanchez and Oyama 2006; Bangert et al. 2008). In the Populus system specifically, recent field and common garden studies have shown that genetic variation across a hybridizing system (P. fremontii, P. angustifolia and their natural F1 and backcross hybrids) results in shifts in plant traits, including secondary chemistry, plant water use and above- and belowground productivity (Fischer et al. 2004; Rehill et al. 2006; Schweitzer et al. 2008a; Lojewski et al. 2009). Whether due directly or indirectly to these plant traits, rates of leaf litter decomposition, total belowground carbon (C) allocation and pools of soil nitrogen (N) and rates of net N mineralization also shift along this genetic gradient (Schweitzer et al. 2004, 2008, b; LeRoy et al. 2006; Whitham et al. 2006; Lojewski et al. 2009; Fischer et al. 2007, 2010).
Chapter Fourteen - From genes to ecosystems
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- By Joseph K. Bailey, Department of Ecology and Evolutionary Biology, University of Tennessee, Jennifer A. Schweitzer, Department of Ecology and Evolutionary Biology, University of Tennessee, Francisco Úbeda, Department of Ecology and Evolutionary Biology, University of Tennessee, Benjamin M. Fitzpatrick, Department of Ecology and Evolutionary Biology, University of Tennessee, Mark A. Genung, Department of Ecology and Evolutionary Biology, University of Tennessee, Clara C. Pregitzer, Department of Ecology and Evolutionary Biology, University of Tennessee, Matthew Zinkgraf, Department of Biological Sciences, Northern Arizona University, Thomas G. Whitham, Department of Biological Sciences, Northern Arizona University, Arthur Keith, Department of Biological Sciences, Northern Arizona University, Julianne M. O’Reilly-Wapstra, Bradley M. Potts, School of Plant Science, University of Tasmania, Brian J. Rehill, Department of Chemistry, US Naval Academy, Carri J. LeRoy, Environmental Studies Program, The Evergreen State College, Dylan G. Fischer, Environmental Studies Program, The Evergreen State College
- Edited by Glenn R. Iason, Marcel Dicke, Wageningen Universiteit, The Netherlands, Susan E. Hartley, University of York
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- Book:
- The Ecology of Plant Secondary Metabolites
- Published online:
- 05 August 2012
- Print publication:
- 19 April 2012, pp 269-286
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Summary
Introduction
Relatively little is understood about the extent to which evolution in one species can result in changes to associated communities and ecosystems, the potential mechanisms responsible for those changes (genetic drift, gene flow or natural selection), the phenotypes or candidate genes that may link ecological and evolutionary dynamics, or the role of rapid evolution and feedbacks. However, linking genes and ecosystems in this manner is fundamental to placing community structure and ecosystem function in an evolutionary framework. This is not an easy endeavour as the field of community genetics is multi-disciplinary (Whitham et al., 2006), and ecological and evolutionary dynamics occur at different spatial and temporal scales. Recent reviews show that plant genetic variation can have extended consequences at the community and ecosystem level (extended phenotype; Whitham et al., 2003) affecting arthropod diversity, soil microbial communities, trophic interactions, carbon dynamics and soil nitrogen availability (Whitham et al., 2006; Johnson & Stinchcombe, 2007; Hughes et al., 2008; Bailey et al., 2009a). Its effects are not limited to single systems or even foundation species, but are common across broadly distributed plant and animal systems, and can have effects at the community and ecosystem level of similar magnitude to traditional ecological factors, such as differences among species (Bailey et al., 2009a, b).
Theory in the fields of community genetics (Shuster et al., 2006; Whitham et al., 2006) and co-evolution (Thompson, 2005) also supports the connection between evolutionary and ecological dynamics (Johnson et al., 2009). Multiple investigators argue that community and ecosystem phenotypes represent complex traits related to variation in the fitness consequences of inter-specific indirect genetic effects (IIGEs) (Thompson, 2005; Shuster et al., 2006; Whitham et al., 2006; Tetard-Jones et al., 2007). In their most basic form, IIGEs occur when the genotype of one individual affects the phenotype and fitness of an associated individual of a different species (Moore et al.,1997; Agrawal et al., 2001; Shuster et al., 2006; Wade, 2007). Such interactions are important in the geographic mosaic theory of co-evolution (Thompson, 2005), the development of community heritability (Shuster et al., 2006) and non-additive responses of community structure, biodiversity and ecosystem function (Bailey et al., 2009a). Empirical evidence for the effects of plant genetic variation on communities and ecosystems, paired with growing theoretical models explaining evolutionary mechanisms for these results, provides a solid foundation for understanding how evolutionary processes, such as drift and selection, may affect community structure and ecosystem function.
3 - A community and ecosystem genetics approach to conservation biology and management
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- By Thomas G. Whitham, Northern Arizona University, Catherine A. Gehring, Northern Arizona University, Luke M. Evans, Northern Arizona University, Carri J. LeRoy, The Evergreen State College, Randy K. Bangert, Idaho State University, Jennifer A. Schweitzer, University of Tennessee, Gerard J. Allan, Northern Arizona University, Robert C. Barbour, University of Tasmania, Dylan G. Fischer, The Evergreen State College, Bradley M. Potts, University of Tasmania, Joseph K. Bailey, Northern Arizona University
- Edited by J. Andrew DeWoody, Purdue University, Indiana, John W. Bickham, Purdue University, Indiana, Charles H. Michler, Purdue University, Indiana, Krista M. Nichols, Purdue University, Indiana, Gene E. Rhodes, Purdue University, Indiana, Keith E. Woeste, Purdue University, Indiana
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- Book:
- Molecular Approaches in Natural Resource Conservation and Management
- Published online:
- 05 July 2014
- Print publication:
- 14 June 2010, pp 50-73
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Summary
INTRODUCTION
The emerging field of community and ecosystem genetics has so far focused on how the genetic variation in one species can influence the composition of associated communities and ecosystem processes such as decomposition (see definitions in Table 3–1; reviews by Whitham et al. 2003, 2006; Johnson & Stinchcombe 2007; Hughes et al. 2008). A key component of this approach has been an emphasis on understanding how the genetics of foundation plant species influence a much larger community. It is reasoned that because foundation species structure their ecosystems by creating locally stable conditions and provide specific resources for diverse organisms (Dayton 1972; Ellison et al. 2005), the genetics of these species as “community drivers” are most important to understand and most likely to have cascading ecological and evolutionary effects throughout an ecosystem (Whitham et al. 2006). For example, when a foundation species’ genotype influences the relative fitness of other species, it constitutes an indirect genetic interaction (Shuster et al. 2006), and when these interactions change species composition and abundance among individual tree genotypes, they result in individual genotypes having distinct community and ecosystem phenotypes. Thus, in addition to an individual genotype having the “traditional” phenotype that population geneticists typically consider as the expression of a trait at the individual and population level, community geneticists must also consider higher-level phenotypes at the community and ecosystem level. The predictability of phenotypes at levels higher than the population can be quantified as community heritability (i.e., the tendency for related individuals to support similar communities of organisms and ecosystem processes; Whitham et al. 2003, 2006; Shuster et al. 2006).
The Nearby Supernova Factory: First Results
- E. Pécontal, T. Buchert, Ph. Di Stefano, Y. Copin, Y. Copin, G. Aldering, P. Antilogus, C. Aragon, S. Bailey, C. Baltay, S. Bongard, C. Buton, M. Childress, É. Gangler, J. Jerke, S. Loken, P. Nugent, R. Pain, É. Pécontal, R. Pereira, S. Perlmutter, D. Rabinovitz, G. Rigaudier, P. Ripoche, K. Runge, R. Scalzo, G. Smadja, H. Swift, C. Tao, R.C. Thomas, C. Wu
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- Journal:
- European Astronomical Society Publications Series / Volume 36 / 2009
- Published online by Cambridge University Press:
- 30 May 2009, pp. 11-15
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- 2009
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The Nearby Supernova Factory aims at discovering and stud- ying a large sample of nearby (0.03 < z < 0.08) thermonuclear supernovae. Potential targets are extracted from the unbiased Palomar-QUEST survey, and follow-up spectro-photometric observations are performed using the dedicated Supernovae Integral-Field Spectrograph. The current sample comprises more than 2700 flux-calibrated optical spectra (320-1000 nm) from 181 supernovæ followed over their full life-time. Specific operation and data-reduction issues are discussed, and first scientific results from this unprecedented dataset are presented.
Automated Surveillance for Central Line–Associated Bloodstream Infection in Intensive Care Units
- Keith F. Woeltje, Anne M. Butler, Ashleigh J. Goris, Nhial T. Tutlam, Joshua A. Doherty, M. Brandon Westover, Vicky Ferris, Thomas C. Bailey
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- Journal:
- Infection Control & Hospital Epidemiology / Volume 29 / Issue 9 / September 2008
- Published online by Cambridge University Press:
- 02 January 2015, pp. 842-846
- Print publication:
- September 2008
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Objective.
To develop and evaluate computer algorithms with high negative predictive values that augment traditional surveillance for central line–associated bloodstream infection (CLABSI).
Setting.Barnes-Jewish Hospital, a 1,250-bed tertiary care academic hospital in Saint Louis, Missouri.
Methods.We evaluated all adult patients in intensive care units who had blood samples collected during the period from July 1, 2005, to June 30,2006, that were positive for a recognized pathogen on culture. Each isolate recovered from culture was evaluated using the definitions for nosocomial CLABSI provided by the National Healthcare Safety Network of the Centers for Disease Control and Prevention. Using manual surveillance by infection prevention specialists as the gold standard, we assessed the ability of various combinations of dichotomous rules to determine whether an isolate was associated with a CLABSI. Sensitivity, specificity, and predictive values were calculated.
Results.Infection prevention specialists identified 67 cases of CLABSI associated with 771 isolates recovered from blood samples. The algorithms excluded approximately 40%-62% of the isolates from consideration as possible causes of CLABSI. The simplest algorithm, with 2 dichotomous rules (ie, the collection of blood samples more than 48 hours after admission and the presence of a central venous catheter within 48 hours before collection of blood samples), had the highest negative predictive value (99.4%) and the lowest specificity (44.2%) for CLABSI. Augmentation of this algorithm with rules for common skin contaminants confirmed by another positive blood culture result yielded in a negative predictive value of 99.2% and a specificity of 68.0%.
Conclusions.An automated approach to surveillance for CLABSI that is characterized by a high negative predictive value can accurately identify and exclude positive culture results not representing CLABSI from further manual surveillance.
Inappropriate Antibiotic Use in a Tertiary Care Center in Thailand: An Incidence Study and Review of Experience in Thailand
- Anucha Apisarnthanarak, Somwang Danchaivijitr, Thomas C. Bailey, Victoria J. Fraser
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- Journal:
- Infection Control & Hospital Epidemiology / Volume 27 / Issue 4 / April 2006
- Published online by Cambridge University Press:
- 21 June 2016, pp. 416-420
- Print publication:
- April 2006
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The incidence and patterns of and factors associated with inappropriate antibiotic use were studied in a tertiary care center in Thailand. The incidence of inappropriate antibiotic use was 25%. Admission to the surgical department (adjusted odds ratio, 2.0; P = .02) and to the obstetrics and gynecology department (adjusted odds ratio, 2.0; P = .03) were associated with inappropriate antibiotic use, whereas consultation with an infectious diseases specialist was protective against inappropriate antibiotic use (adjusted odds ratio, 0.15; P = .01).
Screening of Physicians for Tuberculosis
- Victoria J. Fraser, Charles M. Kilo, Thomas C. Bailey, Gerald Medoff, W. Claiborne Dunagan
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- Journal:
- Infection Control & Hospital Epidemiology / Volume 15 / Issue 2 / February 1994
- Published online by Cambridge University Press:
- 02 January 2015, pp. 95-100
- Print publication:
- February 1994
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Objective:
To determine the prevalence of tuberculous infection among a sample of physicians at Barnes Hospital and to determine the frequency of tuberculin skin testing and the adequacy of follow-up for physicians with positive tuberculin skin tests.
Design:Convenience sample.
Setting1,000-bed, university-affiliated tertiary care hospital.
SubjectsPhysicians attending departmental conferences were screened for tuberculosis. Prior history of tuberculosis, antituberculous therapy, BCG vaccination, and previous tuberculin skin test results were obtained with a standardized questionnaire. Tuberculin skin tests were performed on those who were previously skintest negative.
Outcome Measure:Tuberculosis infection, prophylactic therapy.
Results:Eighty-six (24.5%) of 351 physicians in the study were skin test positive by history or currently performed skin test. Of 61 who reported a previously reactive skin test, 40 (66%) had been eligible for isoniazid prophylaxis, but only 15 (37.5%) of 40 had completed at least six months of therapy. Of 290 physicians reporting a previously negative skin test, 25 conversions (8.6%) were identified. Previously undiagnosed, asymptomatic pulmonary tuberculosis was identified in one physician.
ConclusionsInfection with Mycobacterium tuberculosis is common among physicians. Physicians were screened irregularly for tuberculosis, and the use of prophylactic therapy was inconsistent. Aggressive tuberculosis screening programs for healthcare workers should be instituted.
Investigation of a Computer Virus Outbreak in the Pharmacy of a Tertiary Care Teaching Hospital
- Thomas C. Bailey, Richard M. Reichley
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- Journal:
- Infection Control & Hospital Epidemiology / Volume 13 / Issue 10 / October 1992
- Published online by Cambridge University Press:
- 21 June 2016, pp. 594-598
- Print publication:
- October 1992
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Objective:
A computer virus outbreak was recognized, verified, defined, investigated, and controlled using an infection control approach. The pathogenesis and epidemiology of computer virus infection are reviewed.
Design:Case-control study.
Setting:Pharmacy of a tertiary care teaching institution.
Results:On October 28, 1991, 2 personal computers in the drug information center manifested symptoms consistent with the “Jerusalem” virus infection. The same day, a departmental personal computer began playing ‘Yankee Doodle,” a sign of “Doodle” virus infection. An investigation of all departmental personal computers identified the “Stoned” virus in an additional personal computer. Controls were functioning virus-free personal computers within the department. Cases were associated with users who brought diskettes from outside the department (5/5 cases versus 5/13 controls, p = .04) and with College of Pharmacy student users (3/5 cases versus 0/13 controls, p = .012). The detection of a virus-infected diskette or personal computer was associated with the number of 5 1/4-inch diskettes in the files of personal computers, a surrogate for rate of media exchange (mean= 17.4 versus 152.5, p = .018, Wilcoxon rank sum test). After education of departmental personal computer users regarding appropriate computer hygiene and installation of virus protection software, no further spread of personal computer viruses occurred, although 2 additional Stoned-infected and 1 Jerusalem-infected diskettes were detected.
Conclusions:We recommend that virus detection software be installed on personal computers where the interchange of diskettes among computers is necessary, that write-protect tabs be placed on all program master diskettes and data diskettes where data are being read and not written, that in the event of a computer virus outbreak, all available diskettes be quarantined and scanned by virus detection software, and to facilitate quarantine and scanning in an outbreak, that diskettes be stored in organized files.